Timeline


and

Jul 27, 2016:

12:40 PM Changeset in genappalpha [1056] by ehb
motd
12:14 PM Changeset in genapp [1055] by ehb
12:14 PM Changeset in genappalpha [1054] by ehb
11:18 AM Changeset in vortexshedding [1053] by ehb
11:18 AM Changeset in vortexsheddingalpha [1052] by ehb
6:38 AM Changeset in vortexshedding [1051] by ehb
X
6:37 AM Changeset in vortexsheddingalpha [1050] by ehb
update svn to live version
6:36 AM Changeset in vortexshedding [1049] by ehb
6:29 AM Changeset in vortexshedding [1048] by ehb
update svn to latest live version

Jul 26, 2016:

1:11 AM Changeset in parammd [1047] by alexey
no plot results output if no requested
1:08 AM Changeset in parammd [1046] by alexey
automatically identify and implement disulfide bonds for proteins..

Jul 22, 2016:

3:05 AM Changeset in parammd [1045] by alexey
Time is added to the movie plus minor issues…

Jul 21, 2016:

4:39 PM Changeset in parammd [1044] by alexey
Added energy plot. Plus corrected all logical scenarios. output …

Jul 20, 2016:

8:02 PM Changeset in parammd [1043] by alexey
Better visuzlized movie preparation process…
6:45 PM Changeset in parammd [1042] by alexey
temperature plot added into analysis section…
3:46 PM Changeset in parammd [1041] by alexey
Nicer movie representations (cratoons, vdw etc.)
10:01 AM Changeset in parammd [1040] by alexey
Movies: camera veiw ritated..

Jul 17, 2016:

9:24 PM docs_directives edited by ehb
(diff)
9:23 PM docs_directives edited by ehb
(diff)
9:20 PM docs_module_fields edited by ehb
(diff)
9:18 PM Changeset in genappalpha [1039] by ehb
html5 user management notify:email option

Jul 15, 2016:

12:49 PM docs_module_fields edited by ehb
some new features documented (diff)
12:40 PM Changeset in parammd [1038] by alexey
unique names for videos with/no solvent solve the issue…
11:12 AM Changeset in quafit [1037] by alexey
Module generator includes plot…
10:30 AM Changeset in quafit [1036] by alexey
correct json…
1:20 AM Changeset in quafit [1035] by alexey
-1 is removed from listboxes for 'Flags' in Aggregates section…
1:04 AM Changeset in quafit [1034] by alexey
Plot of the experimental and final fit added..

Jul 14, 2016:

6:57 PM Changeset in parammd [1033] by alexey
Movies with and without solvent..
3:29 PM Changeset in sassie2 [1032] by curtisj
added line counter script
10:50 AM Changeset in genappalpha [1031] by ehb
html5 admin user approval start of user manage module textarea …
12:15 AM Changeset in parammd [1030] by alexey
Video of the MD trajectory is available (VMD, povray and ffmpeg are …

Jul 12, 2016:

3:37 PM Changeset in parammd [1029] by alexey
Ordering of messaging && adding actual MD simulations on top of …

Jul 10, 2016:

2:31 PM Changeset in parammd [1028] by alexey
error message box in case of smaller PBC than molecular size
2:07 PM Changeset in parammd [1027] by alexey
Choice of salt added..

Jul 9, 2016:

11:07 PM Changeset in quafit [1026] by alexey
Fully ready for testing - all input fields are controlled by …
10:52 PM Changeset in quafit [1025] by alexey
sequence of Flinkers…
9:49 PM Changeset in quafit [1024] by alexey
more fields controlled - almost ready
8:56 PM Changeset in quafit [1023] by alexey
more fields…
8:55 PM Changeset in genappalpha [1022] by alexey
closure version
12:53 PM Changeset in quafit [1021] by alexey
some integer fields..
12:40 PM Changeset in genappalpha [1020] by alexey
enable minus sign in the regex for int $$ floats

Jul 8, 2016:

4:17 PM Changeset in quafit [1019] by alexey
cleaned up entire Structure of States section..
2:29 PM Changeset in bayesapp [1018] by ehb
relieve limits on qmin/qmax to allow blanks
1:53 PM Changeset in genappalpha [1017] by ehb
listbox defaults under repeaters allow blank non-required fields part …
1:51 PM Changeset in quafit [1016] by alexey
1:51 PM Changeset in quafit [1015] by alexey
updates on Flag listboxes..
1:21 PM Changeset in genappalpha [1014] by ehb
default setting fix
1:07 PM Changeset in genappalpha [1013] by alexey
changed regex's for Floating point and Intereg numbers
12:24 PM Changeset in bayesapp [1012] by ehb
autostart, up cpu time limit bugfix (qmin/qmax were flipped) updated limits
10:31 AM Changeset in genappalpha [1011] by alexey
Nowrap option for the page..
2:58 AM Changeset in quafit [1010] by alexey
and PAir of AA constraints section, reex's…
2:49 AM Changeset in quafit [1009] by alexey
correction on floating point numbs regex + AA Constraints section
1:24 AM Changeset in quafit [1008] by alexey
1:21 AM Changeset in quafit [1007] by alexey
placing bunch of regex's for fileds - cleaned up RD && Aggregates …

Jul 7, 2016:

11:34 PM Changeset in quafit [1006] by alexey
Proper tabultion of complex data..
8:10 PM Changeset in quafit [1005] by alexey
all Flags are now listboxes..
5:59 PM Changeset in quafit [1004] by alexey
Flags made listboxes of -1,0,1,2
1:20 PM Changeset in quafit [1003] by alexey
cleaning up unnecessary portions…
3:03 AM Changeset in quafit [1002] by alexey
Thonk it's ready to GO!!!
2:51 AM Changeset in quafit [1001] by alexey
seems to populate everything correctly - starting from # of states and …
2:13 AM Changeset in quafit [1000] by alexey
corrected error on Experiments sectiopn
1:59 AM Changeset in quafit [999] by alexey
plus aggregates..
1:52 AM Changeset in quafit [998] by alexey
redo all functions for the upper level repeater (# of ind states..)

Jul 6, 2016:

10:24 PM Changeset in quafit [997] by alexey
Final upper level repeater - # of states…
6:49 AM Changeset in genappalpha [996] by ehb
html5 fix for required/non-required text field
2:43 AM Changeset in quafit [995] by alexey
same for module generation…
2:36 AM Changeset in quafit [994] by alexey
updated general .dat template - good for demo of the 1LP7 example..
2:27 AM Changeset in quafit [993] by alexey
uploaded file extensions..
1:40 AM Changeset in quafit [992] by alexey
module generation..

Jul 5, 2016:

11:33 PM Changeset in quafit [991] by alexey
and Pair of AA constraints..
10:33 PM Changeset in quafit [990] by alexey
aa_constraints - reading/modifying
5:15 PM Changeset in genappalpha [989] by ehb
bugfix for new repeater style in system modules
4:52 PM Changeset in quafit [988] by alexey
Proper name of Results directory
4:20 PM Ticket #87 (rename duplicate names in json files) created by curtisj
so I am testing the new genappalpha on sassie2 & discovered this issue …
4:02 PM Changeset in quafit [987] by alexey
aa contraints…
2:37 AM Changeset in quafit [986] by alexey
More updates on qualfit - treat properly use/calculating .sig file..

Jul 4, 2016:

5:12 PM Changeset in genappalpha [985] by ehb
save repeater text dependency to file on show repeaters option of genapp.pl
4:30 PM Changeset in quafit [984] by alexey
FLs..
4:24 PM Changeset in quafit [983] by alexey
almost done with FLs…
3:57 PM Changeset in quafit [982] by alexey
s=json for FLs
3:56 PM Changeset in quafit [981] by alexey
more on flexible linkers section..
1:21 PM Changeset in quafit [980] by alexey
Flexible linkers…
1:08 PM Changeset in quafit [979] by alexey
Working on flexible linkers repeators…
10:25 AM Changeset in genappalpha [978] by ehb
html5 job history: support for anonymous (not logged in) jobs. changes …
10:23 AM Changeset in bayesapp [977] by ehb
more bayesapp updates

Jul 3, 2016:

6:08 PM Changeset in bayesapp [976] by ehb
crop pr plot a bit above dmax
2:35 PM Changeset in quafit [975] by alexey
nested repeaters finally behave as expected…
12:11 PM Changeset in bayesapp [974] by ehb
2nd figure ... basically complete alpha
11:48 AM Changeset in bayesapp [973] by ehb
bayesapp 1st image up
11:47 AM Changeset in genappalpha [972] by ehb
image output html5
10:35 AM Changeset in bayesapp [971] by ehb
more bayesapp updates
10:33 AM Changeset in genappalpha [970] by ehb
fill for arrays in extendedjsoninputtags centeroutput option colspan …
8:33 AM Changeset in genappalpha [969] by ehb
update to fill arrays

Jul 2, 2016:

5:28 PM Changeset in quafit [968] by alexey
RD && Experimental sections are Repeated na dModified..
12:48 PM Changeset in bayesapp [967] by ehb
bayesapp updates
11:35 AM Changeset in bayesapp [966] by ehb
updates to bayesapp

Jul 1, 2016:

2:53 PM Changeset in bayesapp [965] by ehb
more bayesapp initial setup
2:42 PM Changeset in bayesapp [964] by ehb
2:39 PM Changeset in bayesapp [963] by ehb
2:34 PM Changeset in bayesapp [962] by ehb
Initial setup for BayesApp? - no where near complete ... just getting …
12:37 PM Changeset in genappalpha [961] by ehb
html5 bugfix to "flat" json generated input
7:42 AM willitfit edited by ehb
(diff)
7:41 AM willitfit edited by ehb
(diff)
7:40 AM willitfit edited by ehb
(diff)
7:33 AM WikiStart_old edited by ehb
(diff)
7:31 AM WikiStart_old edited by ehb
(diff)
7:28 AM WikiStart_old edited by ehb
(diff)

Jun 30, 2016:

7:06 PM Changeset in quafit [960] by alexey
Now fields of nested repeaters are controlled from GenApp?..
6:20 PM Changeset in quafit [959] by alexey
code change according to "extendedjsoninputtags" : "true" syntax
3:37 PM Changeset in quafit [958] by alexey
module generator upt
2:02 PM Changeset in quafit [957] by alexey
generation of qualfit module with no listboxes …
12:46 PM Changeset in genappalpha [956] by ehb
html5 support for parameter files updated for new repeat id's
11:52 AM docs_repeat edited by ehb
(diff)
11:00 AM Changeset in genappalpha [955] by ehb
allow extended json input tags
7:38 AM Changeset in willitfit [954] by ehb
some color and style changes
7:32 AM Changeset in genappalpha [953] by ehb
relax sys_status poll from 30s to 2m
7:27 AM Changeset in genapp [952] by ehb
additional debug to base.php, hard link bypass for sys_captcha.php
7:17 AM Changeset in genappalpha [951] by ehb
avoid hard link if needed
6:41 AM Changeset in genappalpha [950] by ehb
Revert to old style json input formatting
4:28 AM Changeset in genapp [949] by ehb
add slackware webroot to setconfig
4:27 AM Changeset in genapp [948] by ehb
genapp: bugfix to listbox values requirement
4:26 AM Changeset in genappalpha [947] by ehb
genapp: put max depth at top in one place and bugfix to the listbox …
1:00 AM docs_repeat edited by ehb
(diff)
12:58 AM docs_repeat created by ehb
12:38 AM WikiStart_old edited by ehb
(diff)
12:33 AM Changeset in genappalpha [946] by ehb
updated graph for repeaters
12:13 AM Changeset in genapp [945] by ehb
genapp added listbox choice nodes to graph
12:06 AM Changeset in genappalpha [944] by ehb
genapp: add listbox choices to graph

Jun 29, 2016:

6:30 PM Changeset in quafit [943] by alexey
nested repeaters
4:57 PM Changeset in quafit [942] by alexey
trying to parse/set parms from multi-level repeaters…
7:32 AM Changeset in genappalpha [941] by ehb
html5 poll sys_status 30s, add retry info to websocket
7:25 AM Changeset in genapptest [940] by ehb
removed duplicate id
6:00 AM Changeset in genappalpha [939] by ehb
html5: support for nested listbox repeaters
5:33 AM Changeset in genapp [938] by ehb
error genapp if duplicate id's found
1:55 AM Changeset in genappalpha [937] by ehb
html5 : removed repeater restrictions, now general repeater structures …
1:06 AM Changeset in genappalpha [936] by ehb
alpha copy of genapp
12:47 AM Changeset in genapp [935] by ehb
html5 bugfix to recent changes... also removed an old debug option …

Jun 28, 2016:

2:57 PM Changeset in parammd [934] by alexey
upt
2:13 PM Changeset in parammd [933] by alexey
output pdb correction
12:53 PM Changeset in parammd [932] by alexey
able to generate solvated system with ions added
6:27 AM Changeset in sassie2 [931] by curtisj
fixed unimportant bug in capriqorn
4:30 AM Changeset in parammd [930] by alexey
user parameters
4:26 AM Changeset in sassie2 [929] by curtisj
new bin/contrast_calculator driver to fix plotting issues; from SK
3:52 AM Changeset in parammd [928] by alexey
Solvation/ion placing charmm modified scripts added..

Jun 27, 2016:

12:05 PM Changeset in parammd [927] by alexey
important upt on reading .pdb coord when columns merged (e.g. FG case)
11:07 AM Changeset in parammd [926] by alexey
Determine size of the biomolecule, correct the size of the periodic …
12:30 AM docs_directives edited by ehb
(diff)
Note: See TracTimeline for information about the timeline view.