Timeline


and

Jul 14, 2016:

6:57 PM Changeset in parammd [1033] by alexey
Movies with and without solvent..
3:29 PM Changeset in sassie2 [1032] by curtisj
added line counter script
10:50 AM Changeset in genappalpha [1031] by ehb
html5 admin user approval start of user manage module textarea …
12:15 AM Changeset in parammd [1030] by alexey
Video of the MD trajectory is available (VMD, povray and ffmpeg are …

Jul 12, 2016:

3:37 PM Changeset in parammd [1029] by alexey
Ordering of messaging && adding actual MD simulations on top of …

Jul 10, 2016:

2:31 PM Changeset in parammd [1028] by alexey
error message box in case of smaller PBC than molecular size
2:07 PM Changeset in parammd [1027] by alexey
Choice of salt added..

Jul 9, 2016:

11:07 PM Changeset in quafit [1026] by alexey
Fully ready for testing - all input fields are controlled by …
10:52 PM Changeset in quafit [1025] by alexey
sequence of Flinkers…
9:49 PM Changeset in quafit [1024] by alexey
more fields controlled - almost ready
8:56 PM Changeset in quafit [1023] by alexey
more fields…
8:55 PM Changeset in genappalpha [1022] by alexey
closure version
12:53 PM Changeset in quafit [1021] by alexey
some integer fields..
12:40 PM Changeset in genappalpha [1020] by alexey
enable minus sign in the regex for int $$ floats

Jul 8, 2016:

4:17 PM Changeset in quafit [1019] by alexey
cleaned up entire Structure of States section..
2:29 PM Changeset in bayesapp [1018] by ehb
relieve limits on qmin/qmax to allow blanks
1:53 PM Changeset in genappalpha [1017] by ehb
listbox defaults under repeaters allow blank non-required fields part …
1:51 PM Changeset in quafit [1016] by alexey
1:51 PM Changeset in quafit [1015] by alexey
updates on Flag listboxes..
1:21 PM Changeset in genappalpha [1014] by ehb
default setting fix
1:07 PM Changeset in genappalpha [1013] by alexey
changed regex's for Floating point and Intereg numbers
12:24 PM Changeset in bayesapp [1012] by ehb
autostart, up cpu time limit bugfix (qmin/qmax were flipped) updated limits
10:31 AM Changeset in genappalpha [1011] by alexey
Nowrap option for the page..
2:58 AM Changeset in quafit [1010] by alexey
and PAir of AA constraints section, reex's…
2:49 AM Changeset in quafit [1009] by alexey
correction on floating point numbs regex + AA Constraints section
1:24 AM Changeset in quafit [1008] by alexey
1:21 AM Changeset in quafit [1007] by alexey
placing bunch of regex's for fileds - cleaned up RD && Aggregates …

Jul 7, 2016:

11:34 PM Changeset in quafit [1006] by alexey
Proper tabultion of complex data..
8:10 PM Changeset in quafit [1005] by alexey
all Flags are now listboxes..
5:59 PM Changeset in quafit [1004] by alexey
Flags made listboxes of -1,0,1,2
1:20 PM Changeset in quafit [1003] by alexey
cleaning up unnecessary portions…
3:03 AM Changeset in quafit [1002] by alexey
Thonk it's ready to GO!!!
2:51 AM Changeset in quafit [1001] by alexey
seems to populate everything correctly - starting from # of states and …
2:13 AM Changeset in quafit [1000] by alexey
corrected error on Experiments sectiopn
1:59 AM Changeset in quafit [999] by alexey
plus aggregates..
1:52 AM Changeset in quafit [998] by alexey
redo all functions for the upper level repeater (# of ind states..)

Jul 6, 2016:

10:24 PM Changeset in quafit [997] by alexey
Final upper level repeater - # of states…
6:49 AM Changeset in genappalpha [996] by ehb
html5 fix for required/non-required text field
2:43 AM Changeset in quafit [995] by alexey
same for module generation…
2:36 AM Changeset in quafit [994] by alexey
updated general .dat template - good for demo of the 1LP7 example..
2:27 AM Changeset in quafit [993] by alexey
uploaded file extensions..
1:40 AM Changeset in quafit [992] by alexey
module generation..

Jul 5, 2016:

11:33 PM Changeset in quafit [991] by alexey
and Pair of AA constraints..
10:33 PM Changeset in quafit [990] by alexey
aa_constraints - reading/modifying
5:15 PM Changeset in genappalpha [989] by ehb
bugfix for new repeater style in system modules
4:52 PM Changeset in quafit [988] by alexey
Proper name of Results directory
4:20 PM Ticket #87 (rename duplicate names in json files) created by curtisj
so I am testing the new genappalpha on sassie2 & discovered this issue …
4:02 PM Changeset in quafit [987] by alexey
aa contraints…
2:37 AM Changeset in quafit [986] by alexey
More updates on qualfit - treat properly use/calculating .sig file..

Jul 4, 2016:

5:12 PM Changeset in genappalpha [985] by ehb
save repeater text dependency to file on show repeaters option of genapp.pl
4:30 PM Changeset in quafit [984] by alexey
FLs..
4:24 PM Changeset in quafit [983] by alexey
almost done with FLs…
3:57 PM Changeset in quafit [982] by alexey
s=json for FLs
3:56 PM Changeset in quafit [981] by alexey
more on flexible linkers section..
1:21 PM Changeset in quafit [980] by alexey
Flexible linkers…
1:08 PM Changeset in quafit [979] by alexey
Working on flexible linkers repeators…
10:25 AM Changeset in genappalpha [978] by ehb
html5 job history: support for anonymous (not logged in) jobs. changes …
10:23 AM Changeset in bayesapp [977] by ehb
more bayesapp updates

Jul 3, 2016:

6:08 PM Changeset in bayesapp [976] by ehb
crop pr plot a bit above dmax
2:35 PM Changeset in quafit [975] by alexey
nested repeaters finally behave as expected…
12:11 PM Changeset in bayesapp [974] by ehb
2nd figure ... basically complete alpha
11:48 AM Changeset in bayesapp [973] by ehb
bayesapp 1st image up
11:47 AM Changeset in genappalpha [972] by ehb
image output html5
10:35 AM Changeset in bayesapp [971] by ehb
more bayesapp updates
10:33 AM Changeset in genappalpha [970] by ehb
fill for arrays in extendedjsoninputtags centeroutput option colspan …
8:33 AM Changeset in genappalpha [969] by ehb
update to fill arrays

Jul 2, 2016:

5:28 PM Changeset in quafit [968] by alexey
RD && Experimental sections are Repeated na dModified..
12:48 PM Changeset in bayesapp [967] by ehb
bayesapp updates
11:35 AM Changeset in bayesapp [966] by ehb
updates to bayesapp

Jul 1, 2016:

2:53 PM Changeset in bayesapp [965] by ehb
more bayesapp initial setup
2:42 PM Changeset in bayesapp [964] by ehb
2:39 PM Changeset in bayesapp [963] by ehb
2:34 PM Changeset in bayesapp [962] by ehb
Initial setup for BayesApp? - no where near complete ... just getting …
12:37 PM Changeset in genappalpha [961] by ehb
html5 bugfix to "flat" json generated input
7:42 AM willitfit edited by ehb
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7:41 AM willitfit edited by ehb
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7:40 AM willitfit edited by ehb
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7:33 AM WikiStart_old edited by ehb
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7:31 AM WikiStart_old edited by ehb
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7:28 AM WikiStart_old edited by ehb
(diff)

Jun 30, 2016:

7:06 PM Changeset in quafit [960] by alexey
Now fields of nested repeaters are controlled from GenApp?..
6:20 PM Changeset in quafit [959] by alexey
code change according to "extendedjsoninputtags" : "true" syntax
3:37 PM Changeset in quafit [958] by alexey
module generator upt
2:02 PM Changeset in quafit [957] by alexey
generation of qualfit module with no listboxes …
12:46 PM Changeset in genappalpha [956] by ehb
html5 support for parameter files updated for new repeat id's
11:52 AM docs_repeat edited by ehb
(diff)
11:00 AM Changeset in genappalpha [955] by ehb
allow extended json input tags
7:38 AM Changeset in willitfit [954] by ehb
some color and style changes
7:32 AM Changeset in genappalpha [953] by ehb
relax sys_status poll from 30s to 2m
7:27 AM Changeset in genapp [952] by ehb
additional debug to base.php, hard link bypass for sys_captcha.php
7:17 AM Changeset in genappalpha [951] by ehb
avoid hard link if needed
6:41 AM Changeset in genappalpha [950] by ehb
Revert to old style json input formatting
4:28 AM Changeset in genapp [949] by ehb
add slackware webroot to setconfig
4:27 AM Changeset in genapp [948] by ehb
genapp: bugfix to listbox values requirement
4:26 AM Changeset in genappalpha [947] by ehb
genapp: put max depth at top in one place and bugfix to the listbox …
1:00 AM docs_repeat edited by ehb
(diff)
12:58 AM docs_repeat created by ehb
12:38 AM WikiStart_old edited by ehb
(diff)
12:33 AM Changeset in genappalpha [946] by ehb
updated graph for repeaters
12:13 AM Changeset in genapp [945] by ehb
genapp added listbox choice nodes to graph
12:06 AM Changeset in genappalpha [944] by ehb
genapp: add listbox choices to graph

Jun 29, 2016:

6:30 PM Changeset in quafit [943] by alexey
nested repeaters
4:57 PM Changeset in quafit [942] by alexey
trying to parse/set parms from multi-level repeaters…
7:32 AM Changeset in genappalpha [941] by ehb
html5 poll sys_status 30s, add retry info to websocket
7:25 AM Changeset in genapptest [940] by ehb
removed duplicate id
6:00 AM Changeset in genappalpha [939] by ehb
html5: support for nested listbox repeaters
5:33 AM Changeset in genapp [938] by ehb
error genapp if duplicate id's found
1:55 AM Changeset in genappalpha [937] by ehb
html5 : removed repeater restrictions, now general repeater structures …
1:06 AM Changeset in genappalpha [936] by ehb
alpha copy of genapp
12:47 AM Changeset in genapp [935] by ehb
html5 bugfix to recent changes... also removed an old debug option …

Jun 28, 2016:

2:57 PM Changeset in parammd [934] by alexey
upt
2:13 PM Changeset in parammd [933] by alexey
output pdb correction
12:53 PM Changeset in parammd [932] by alexey
able to generate solvated system with ions added
6:27 AM Changeset in sassie2 [931] by curtisj
fixed unimportant bug in capriqorn
4:30 AM Changeset in parammd [930] by alexey
user parameters
4:26 AM Changeset in sassie2 [929] by curtisj
new bin/contrast_calculator driver to fix plotting issues; from SK
3:52 AM Changeset in parammd [928] by alexey
Solvation/ion placing charmm modified scripts added..

Jun 27, 2016:

12:05 PM Changeset in parammd [927] by alexey
important upt on reading .pdb coord when columns merged (e.g. FG case)
11:07 AM Changeset in parammd [926] by alexey
Determine size of the biomolecule, correct the size of the periodic …
12:30 AM docs_directives edited by ehb
(diff)

Jun 26, 2016:

4:38 PM Changeset in parammd [925] by alexey
progress bar/text for NAMD minimisation
4:03 PM Changeset in parammd [924] by alexey
updates related to NAMD minimization runs for both proteins and dna
3:30 PM Changeset in parammd [923] by alexey
namd temp min upt
8:03 AM Changeset in genapp [922] by ehb
html5. working video clear. fixed reattach startup (primarily for …
3:33 AM Changeset in genapp [921] by ehb
html5 try at resetting video
3:13 AM Changeset in genapp [920] by ehb
html5 reset output on press of submit
3:05 AM Changeset in genapp [919] by ehb
html5: textarea fixups, better reattach

Jun 25, 2016:

11:29 AM Changeset in sassie2 [918] by curtisj
moved docking to alpha
10:28 AM Changeset in sassie2 [917] by curtisj
added capriqorn filter to bin/capriqorn
5:23 AM Changeset in genapp [916] by ehb
bugfix to last bugfix ;)
5:18 AM Changeset in genapp [915] by ehb
html5 bugfix : the jQuery .load() function can return before the …
4:33 AM Changeset in genapp [914] by ehb
bugfix
3:45 AM Changeset in genapp [913] by ehb
html5: resource specific job blocking with user override capability, …
3:32 AM docs_appconfig edited by ehb
(diff)
3:31 AM docs_appconfig edited by ehb
(diff)
12:59 AM Changeset in genapp [912] by ehb
html5: fixed issue: when logged into an application and user went to a …
12:48 AM Changeset in genapp [911] by ehb
html5: stop prior get_results poll and messaging when submit or reset …

Jun 24, 2016:

11:16 PM Changeset in genapp [910] by ehb
html5 updates
11:31 AM Changeset in genapp [909] by ehb
install wsproxy needs proxy_wstunnel
4:43 AM Changeset in genapp [908] by ehb
try 2 at delay issue
4:33 AM Changeset in genapp [907] by ehb
html5 attempt to make sure view available works reliably
2:19 AM genfit edited by ehb
(diff)
12:50 AM Changeset in genapp [906] by ehb
html5 more style control for menu area

Jun 23, 2016:

8:54 PM Changeset in parammd [905] by alexey
charmm can be run for generation of multi-chain proteins..
7:30 PM Changeset in parammd [904] by alexey
charmm template for proteins added (more work on multiple chaons yet..)
6:55 PM Changeset in sassie2 [903] by curtisj
added prody_filter
6:48 PM Changeset in parammd [902] by alexey
cleaning up in the beginning
6:17 PM Changeset in parammd [901] by alexey
HIS to HSD - added alias for processing proteins
5:49 PM Changeset in parammd [900] by alexey
Parsing and preparation of multi-chain proteins .pdb files of various …
5:41 PM Changeset in parammd [899] by alexey
updates on nucleic acids ppdb parsing - when chain's atoms/residues …
8:23 AM docs_appconfig edited by ehb
(diff)
8:22 AM docs_module_fields edited by ehb
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8:19 AM docs_module_fields edited by ehb
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8:15 AM docs_appconfig edited by ehb
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8:12 AM docs_appconfig edited by ehb
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8:05 AM docs_appconfig edited by ehb
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8:02 AM Changeset in genapp [898] by ehb
html5 : job limits
5:07 AM Changeset in sassie2 [897] by curtisj
changed sascalc_md to sascalc_pbc

Jun 22, 2016:

2:54 PM Changeset in sassie2 [896] by curtisj
added capriqorn, prody, tamc
2:53 PM Changeset in sassie2 [895] by curtisj
added capriqorn, prody, tamc
2:52 PM Changeset in sassie2 [894] by curtisj
added new menu organization
1:37 PM Changeset in sassie2 [893] by curtisj
updated menu.json
12:15 PM Changeset in genapp [892] by ehb
html5: group "login" to allow menu groups to be only allowed for login
12:02 PM Changeset in genapp [891] by ehb
html5 stop 'modal' from clearing background of main screen
11:25 AM Changeset in vortexsheddingalpha [890] by ehb
Josef's file updates
11:10 AM Changeset in parammd [889] by alexey
i think i'm dome with parsing various DNA .pdb files..
8:21 AM docs_directives edited by ehb
(diff)
8:19 AM Changeset in genapp [888] by ehb
html5 menu position fixed style option
8:03 AM Changeset in genapp [887] by ehb
more html5 menu styles, additional docx image option
7:55 AM docs_directives edited by ehb
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7:51 AM docs_directives edited by ehb
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7:49 AM docs_file_inclusion edited by ehb
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2:17 AM docs_directives edited by ehb
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2:05 AM docs_directives edited by ehb
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2:01 AM Changeset in genapp [886] by ehb
html5, more directive style controls, new options for doc2html …
1:39 AM docs_directives edited by ehb
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1:28 AM docs_directives edited by ehb
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1:26 AM docs_directives edited by ehb
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1:24 AM docs_directives edited by ehb
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1:24 AM docs_directives edited by ehb
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1:20 AM docs_file_inclusion edited by ehb
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1:19 AM docs_file_inclusion edited by ehb
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Jun 21, 2016:

11:32 PM Changeset in vortexsheddingalpha [885] by ehb
updates from Josef
6:07 PM Changeset in parammd [884] by alexey
Covering more cases of various nucleic acid .pdb formats ... not ready yet
7:22 AM Changeset in parammd [883] by alexey
generalization for read-in and charmm processing of arbitrary .pdb …
4:48 AM Changeset in genapp [882] by ehb
ubuntu already has pcntl avail
4:44 AM install edited by ehb
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4:44 AM install edited by ehb
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4:42 AM install edited by ehb
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4:22 AM install edited by ehb
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4:04 AM install edited by ehb
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4:03 AM install_app edited by ehb
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4:03 AM install_app edited by ehb
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4:02 AM install_app edited by ehb
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4:02 AM install_app edited by ehb
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3:59 AM install edited by ehb
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3:58 AM install edited by ehb
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3:56 AM install edited by ehb
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3:55 AM install edited by ehb
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3:45 AM install edited by ehb
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3:45 AM install edited by ehb
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3:44 AM install_app edited by ehb
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3:43 AM WikiStart_old edited by ehb
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3:35 AM install edited by ehb
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3:34 AM install edited by ehb
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3:34 AM install edited by ehb
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3:33 AM install_app created by ehb
3:23 AM Changeset in genapp [881] by ehb
spelling fix
3:22 AM emailserver created by ehb
3:08 AM install edited by ehb
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3:00 AM install edited by ehb
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2:56 AM install edited by ehb
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2:50 AM Changeset in genapp [880] by ehb
minor bugfix
2:36 AM install edited by ehb
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2:35 AM install edited by ehb
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2:02 AM install edited by ehb
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2:01 AM install edited by ehb
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1:45 AM install edited by ehb
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1:44 AM install edited by ehb
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1:37 AM install edited by ehb
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1:36 AM install edited by ehb
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1:35 AM install created by ehb
1:23 AM add_directives edited by ehb
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1:23 AM WikiStart_old edited by ehb
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1:22 AM add_directives created by ehb
1:16 AM WikiStart_old edited by ehb
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1:09 AM Changeset in demo, denfert, genapptest, parammd, quafit, sassie2, sassie2test, somo, vortexshedding, vortexsheddingalpha, willitfit [879] by ehb
Removed directives.json from svn (backed them up as alternate name) …

Jun 20, 2016:

7:02 PM WikiStart_old edited by ehb
(diff)
5:04 PM Changeset in genapp [878] by alexey
several console.log messages commented out
2:38 PM Changeset in genapp [877] by ehb
more getapp fixes
2:36 PM Changeset in genapp [876] by ehb
& more changes to install
2:33 PM Changeset in genapp [875] by ehb
more install fixes
2:30 PM Changeset in genapp [874] by ehb
bugfix
2:19 PM Changeset in genapptest [873] by ehb
new format directives.json.template
2:12 PM Changeset in genapp [872] by ehb
bugfix in install
2:10 PM Changeset in genapp [871] by ehb
devlist info added
2:02 PM WikiStart_old edited by ehb
(diff)
1:25 PM Changeset in genapp [870] by ehb
bugfix in install
1:14 PM Changeset in genapp [869] by ehb
install changes, getapp close to ready
12:29 PM Changeset in demo [868] by ehb
a bit more
12:27 PM Changeset in demo [867] by ehb
changes to template format

Jun 19, 2016:

9:09 PM Changeset in genapp [866] by ehb
firewall for rhel, parallel make
7:24 PM Changeset in genapptest [865] by ehb
reformatted, added sys_file_manager
3:51 PM Changeset in genapp [864] by ehb
rhel .. more install
1:16 PM Changeset in genapp [863] by ehb
centos to http24 for proxy
12:45 PM jetstream edited by ehb
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12:41 PM jetstream edited by ehb
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12:38 PM jetstream edited by ehb
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12:38 PM jetstream edited by ehb
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12:24 PM Changeset in genapp [862] by ehb
rhel install move to httpd2.4 for proxy
10:58 AM Changeset in genapp [861] by ehb
Support for wget or curl or gives a message
9:44 AM jetstream edited by ehb
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9:28 AM jetstream edited by ehb
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9:27 AM jetstream edited by ehb
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Jun 18, 2016:

10:30 PM jetstream edited by ehb
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10:28 PM jetstream edited by ehb
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10:23 PM jetstream edited by ehb
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10:19 PM jetstream edited by ehb
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10:11 PM jetstream edited by ehb
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9:59 PM jetstream edited by ehb
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9:53 PM jetstream edited by ehb
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9:53 PM jetstream edited by ehb
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6:44 PM Changeset in genapp [860] by ehb
few more rh install mods
10:19 AM Changeset in genapp [859] by ehb
install mod
10:11 AM Changeset in genapp [858] by ehb
more install mods
9:51 AM Changeset in genapp [857] by ehb
install help mod
9:31 AM Changeset in genapp [856] by ehb
install split redhat/centos ... redhat still in development
9:29 AM jetstream edited by ehb
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9:28 AM jetstream edited by ehb
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9:28 AM jetstream edited by ehb
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9:27 AM jetstream edited by ehb
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8:41 AM Changeset in genapp [855] by ehb
install mods

Jun 17, 2016:

4:41 PM Changeset in genapp [854] by ehb
install mods
4:17 PM Changeset in genapp [853] by ehb
changes to support external config.json
1:33 PM Changeset in genapp [852] by ehb
more setconfig info
12:26 PM Changeset in genapp [851] by ehb
initial setup of config.json (in development)

Jun 16, 2016:

1:03 PM jetstream edited by ehb
(diff)
12:58 PM jetstream edited by ehb
(diff)
12:41 PM Changeset in genapp [850] by ehb
a bit more genapp.pl updates, not ready for primetime
12:40 PM Changeset in genapp [849] by ehb
needs executable bit
12:33 PM jetstream edited by ehb
(diff)
12:28 PM Changeset in genapp [848] by ehb
updates to get an application still in development
12:10 PM Changeset in genapp [847] by ehb
use provided captcha.ttf
12:03 PM Changeset in genapp [846] by ehb
font for captcha
11:54 AM jetstream edited by ehb
(diff)
11:47 AM Changeset in genapptest [845] by ehb
mods for alt perl
9:57 AM Changeset in genapp [844] by ehb
and actuall enable install
9:56 AM Changeset in genapp [843] by ehb
text change
9:49 AM Changeset in genapp [842] by ehb
note about parallel compile
9:03 AM Changeset in genapp [841] by ehb
centos6.7 install mods (still in development)
9:02 AM Changeset in genapp [840] by ehb
Changes to support alt install of perl
8:56 AM Changeset in genapp [839] by ehb
change to support alt perl
8:50 AM Changeset in genapp [838] by ehb
add mkchangearc.pl utility
8:39 AM Changeset in genapp [837] by ehb
first of several commits supporting alternate perl location
7:34 AM jetstream edited by ehb
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Jun 15, 2016:

8:56 AM Changeset in genapp [836] by ehb
needed for cache remove
8:51 AM Changeset in genapp [835] by ehb
html5: optional cache removal for authorized users
8:39 AM docs_cache edited by ehb
(diff)
8:38 AM docs_appconfig edited by ehb
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Note: See TracTimeline for information about the timeline view.