Changeset 1520 in rotdif


Ignore:
Timestamp:
Aug 18, 2018, 4:48:01 PM (23 months ago)
Author:
yuexi
Message:

elm json

Files:
1 added
4 edited

Legend:

Unmodified
Added
Removed
  • directives.json.template

    r1479 r1520  
    22# comments are ok but must start the line in this JSON
    33{
    4   "title"                     : "ROTDIF_tmplate",
     4  "title"                     : "ROTDIF_in_tmplate_Yuexi",
    55
    66# the application name should not contain any special characters
  • files/welcome_my.html

    r1471 r1520  
    1010    <span style=
    1111    "font-size:16pt;font-family:'Times New Roman'">
    12       The relaxation toolbox (ROTDIF) has several important capabilities.
     12      The relaxation toolbox ROTDIF has several important capabilities.
    1313      First, it consists of a new version of the ROTDIF program, which can now simultaneously analyze relaxation data for
    1414      15N and 13C at several fields. The new ROTDIF 3.0 is orders of magnitude faster than the previous version, and is now able
    15       to accurately compute a fully anisotropic rotational diffusion tensor from a 250+ bond dataset in under 0.05 s, on a standard
    16       laptop. ROTDIF is also more robust, based on our simulations, when processing data with large conformational exchange contributions.
     15      to accurately compute a fully anisotropic rotational diffusion tensor from a 250+ bond dataset in under 0.05 s. ROTDIF is also more robust,
     16      based on our simulations, when processing data with large conformational exchange contributions.
    1717      Order parameters can also be rapidly computed. The toolbox also contains ELM3 and ELMDOCK, a program for ab initio prediction of the
    1818      rotational diffusion tensor from molecular structure, and the
     
    2323    <p></p>
    2424    <p> <u>If you use ROTDIF in your work, please cite: </u></p>
    25     <p style="color:#ffa500"> XXX et al.,  <span style=
    26     "font-style:italic;font-size:14pt;font-family:'Times New Roman'">Journal of XXX</span> XX, 201X, XXX-XXX </p>
    27 
     25    <p style="color:#ffa500"> [1] Berlin K et al., Deriving quantitative dynamics information for proteins and RNAs using ROTDIF with a graphical user interface <span style="font-style:italic;font-size:14pt;font-family:'Times New Roman'"> J Biomol NMR </span> 2013 Dec;57(4):333-52 </p>
     26    <p style="color:#ffa500"> [2] Walker O et al., Efficient and accurate determination of the overall rotational diffusion tensor of a molecule from 15N relaxation data using computer program ROTDIF  <span style=
     27    "font-style:italic;font-size:14pt;font-family:'Times New Roman'"> J Magn Reson </span> 2004 Jun;168(2):336-45. </p>
    2828 </div>
  • menu.json

    r1471 r1520  
    6161
    6262        ,{
    63             "id"      : "rotdif",
     63            "id"      : "rotdif_menu",
    6464            "label"   : "Run ROTDIF",
    6565            "icon"    : "pngs/simulate.png",
    6666            #"help"    : "help text",
    67             "autorun" : "rotdif_local",
     67            #"autorun" : "rotdif_all",
    6868            "modules" : [
    6969                         {
    70                           "id"    : "rotdif_local",
    71                           "label" : "Param_m",
    72                           "nobutton" : "true"
    73                          }
     70                          "id"    : "rotdif_all",
     71                          "label" : "ROTDIF & Dynamics Analysis",
     72                          "views" : [ "Input", "Output", "Plots", "OpenGL" ]
     73                         },
     74                          {
     75                          "id"    : "elm",
     76                          "label" : "Diffusion Tensor Prediction",
     77                          "views" : [ "Input", "Output", "Plots", "OpenGL" ]
     78                          },
     79                         {   
     80                          "id"    : "elmdock",
     81                          "label" : "Diffusion Tensor-Guided Docking",
     82                          "views" : [ "Input", "Output", "Plots", "OpenGL" ]
     83                          }                         
    7484                        ]
    7585            }
    76 
    77 
    78            ,{
     86        ,{
    7987            "id"         : "admin",
    8088            "restricted" : "admin",
     
    115123                          ]
    116124          }
    117      
    118     ]
     125]
    119126}
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